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177. Dynamics of Photoinduced Charge Separation and Charge Recombination in Synthetic DNA Hairpins with Stilbenedicarboxamide Linkers, Frederick D. Lewis; Taifeng Wu; Xiaoyang Liu; Robert L. Letsinger; Scott R. Greenfield; Scott E. Miller; Michael R. Wasielewski. J. Am. Chem. Soc. 2000, 122(12), 2889-2902.
2001
2002
206. DNA-mediated electron transfer across synthetic T:A*T triplex structures, F. D. Lewis, Y. Wu, R. T. Hayes, and M. R. Wasielewski, Angew. Chem., 2002, 41, 3485-3487.
207. Synthesis, structure, and photochemistry of exceptionally stable synthetic DNA hairpins with stilbene diether linkers, F. D. Lewis, Y. Wu, and X. Liu, J. Am. Chem. Soc., 2002, 124, 12165-12173.
208. Symmetry-enforced conformational control of photochemical reactivity in 2,6-diphenylstyrene, F. D. Lewis, X. Zuo, V. Grevorgyan, and M. Rubin, J. Am. Chem. Soc., 2002, 124, 13664-3665.
2003209. Structure and excited states of extended and folded mono-, di-, and tri-N-arylbenzamides, F. D. Lewis, T. M. Long, Charlotte L. Stern, and W. Liu, J. Phys. Chem. A, 2003, 107, 3254-3262.
210. N,NÕ-Dimethyl-N.NÕ-diarylurea anion radicals: an intramolecular reductive elimination, T. L. Kurth, F. D. Lewis, C. M. Hattan, R. C. Reiter, and C. D. Stevenson, J. Am. Chem. Soc. 2003, 125, 1460-1461.
211.Starting Over with Styrene, F. D. Lewis and X. Zuo, The Spectrum, 2003, 16, 8-15.
212. Torsional barriers for planar vs. twisted singlet styrenes, F. D. Lewis and X. Zuo, J. Am. Chem. Soc. 2003, 125, 2046-2047
213. Dynamics and energetics of single step hole transport in DNA, F. D. Lewis, J. Liu, X. Zuo, R. T. Hayes, and M. R. Wasielewski, J. Am. Chem. Soc. 2003, 125, 4850-4861.
214. Hydroxystilbene isomer-specific photoisomerization versus proton transfer, F. D. Lewis and E. M. Crompton, J. Am. Chem. Soc. 2003, 125, 4044-4045.
215. Intramolecular excimer fluorescence from folded ground state rotamers of N,NÕ-dimethyl-N,NÕ-dipyrenylurea protophanes, F. D. Lewis and T. L. Kurth, Can. J. Chem. 2003, 81, 770-776.
216. Activated decay pathways for planar vs. twisted singlet phenylalkenes, F. D. Lewis and X. Zuo, J. Am. Chem. Soc. 2003, 125, 8806-8813.
217. SET addition of amines to alkenes, F. D. Lewis and E. M. Crompton, in Handbook of Photochemistry, 2nd Ed. W. Horspool and F. Lenci, eds. CRC Press, Boca Raton, 2003.
218. Control of kinetics and thermodynamics of [1,5]-shifts by aromaticity: a view through the prism of Marcus theory, I. V. Alabugin, M. Manoharan, B. Breiner, and F. D. Lewis, J. Am. Chem. Soc. 2003, 125, 9329-9342.
219. Conformer-specific photoisomerization of some 2-vinylbiphenyls, F. D. Lewis and X. Zuo, Photochem. Photobiol. Sci. 2003, 2, 1059-1066.
220. Face-to-face and edge-to-face p-p interactions in a synthetic DNA hairpins with a stilbenediether linker, M. Egli, V. Tereshko, G. N. Mushudov, R. Sanishvili, X. Liu, and F. D. Lewis, J. Am. Chem. Soc. 2003, 125, 10842-10849.
221. Stepwise evolution of the structure and electronic properties of DNA, F. D. Lewis, X. Liu, Y. Wu, and X. Zuo, J. Am. Chem. Soc. 2003, 125, 12729-12731.
222. Ground state conformational equilibrium and photochemical behavior of syn and anti N,NÕ-dimethyl-N,NÕ-di-1-naphthylurea protophanes, T. L. Kurth and F. D. Lewis, J. Am. Chem. Soc. 2003, 125, 13760-13767.
2004223. Dynamics and equilibrium for the formation of fluorescent Lewis acid-base exciplexes and triplexes between 9-aminophenanthrene and aliphatic amines, F. D. Lewis, A. Ahrens, and T. L. Kurth, Photochem. Photobiol. Sci. 2004, 3, 341 - 347.
224. The formation and behavior of fluorescent Lewis acid-base exciplexes and triplexes between 3-aminostilbenes and aliphatic amines, F. D. Lewis, R. S. Kalgutkar, and T. L. Kurth, J. Phys. Chem. A, 2004, 108, 1425-1434.
225. Dynamics and equilibrium for single step hole transport in Duplex DNA, F. D. Lewis and M. R. Wasielewski, Topics in Current Chemistry, 2004, 236, 45-65.
226. Reversible formation of DNA G-quadruplex hairpin dimers from stilbenediether conjugates, F. D. Lewis, Y. Wu, and L. Zhang, Chem. Commun. 2004, 636-637.
227. Polyaryl anion radicals via alkali metal reduction of arylurea oligomers, Lewis, F. D.; Kurth, T. L.; Hattan, C. M.; Reiter, R. C.; Stevenson, C. D.; Org. Lett. 2004; 6(10); 1605-1608.
228. Positional effects of the hydroxy substituent on the photochemical and photophysical behavior of 3- and 4-hydroxystilbenes, Lewis, F. D. and Crompton, E. C. Photochem. Photobiol. Sci. 2004, 3, 360-668.
229. DNA-Mediated exciton coupling and electron transfer between donor and acceptor stilbenes separated by a variable number of base pairs, Lewis, F. D.; Wu, Y.; Zuo, X.; Hayes, R. T.; and Wasielewski, J. Am. Chem. Soc. 2004, 126, 8206-8215.
2005230. Ultrafast proton transfer dynamics of hydroxystilbene photoacids, F. D. Lewis, L. Sinks, W. Weigel, M. C. Sajimon, and E. C. Crompton, J. Phys. Chem. A 2005, 109, 2443-2451.
231. Electronic interactions in tertiary oligophenylureas, F. D. Lewis, T. L. Kurth, and G. B. Delos Santos, J. Phys. Chem. B 2005, 109, 4893-4899.
232. Convergent synthesis of nonsymmetric p-stacked photophanes assembled with urea linkers, F. D. Lewis, G. B. Delos Santos, and W. Liu, J. Org. Chem. 2005, 70, 2974-2979.
233. DNA Molecular Photonics, F. D. Lewis, Photochem. Photobiol. 2005, 81, 65-72.
234. Photocyclization of 2-vinyldiphenylacetylenes and behavior of the isonaphthalene intermediates, M. C. Sajimon and F. D. Lewis, Photochem. Photbiol. Sci. 2005, 4, 629-626.
235. Orientation and control of fluorescence resonance energy transfer using DNA as a helical scaffold, F. D. Lewis, L. Zhang, and X. Zuo, J. Am. Chem. Soc. 2005, 127, 10002-10003.
236. Electronic interactions between p-stacked chromophores in nonsymmetric tertiary naphthyl di- and polyureas, G. B. Delos Santos and F. D. Lewis, J. Phys. Chem. A, 2005, 109, 8106-8112.
237. DNA as helical ruler: Exciton-coupled circular dichroism in DNA conjugates, F. D. Lewis, L. Zhang, X. Liu, X. Zuo, D. M. Tiede, H. Long, and G. C. Schatz, J. Am. Chem. Soc. 2005, 127, 14445-14453.
238. Absolute rates of hole transfer in DNA, K. Senthilkumar, F. C. Grozema, C. F. Guerra, F. M. Bilkelhaupt, F. D. Lewis, Y. A. Berlin, M. A. Ratner, and L. D. A. Siebbeles, J. Am. Chem. Soc. 2005, 127, 14894-14903.
239. Duplex and hairpin dimer structures for perylene diimide-oligonucleotide conjugates, Y. Zheng, H. Long, G. C. Schatz, and F. D. Lewis, Chem. Commun. 2005, 4795-4797.
240. Photocyclization of a conformationally constrained 2-vinylbiphenyl, M. C. Sajimon and F. D. Lewis, Photochem. Photobiol. Sci. 2005, 4, 789-791.
241. Competitive 1,2- and 1,5-hydrogen shifts following 2-vinylbiphenyl photocyclization, F. D. Lewis, M. C. Sajimon, X. Zuo, M. Rubin, and V. Gevorgyan, J. Org. Chem. 2005, 70, 10447-10452.
2006242. Ring-closing photoisomerization of some 2,6-diarylstyrenes, F. D. Lewis, E. M. Crompton, M. C. Sajimon, V. Gevorgyan, and M. Rubin, Photochem. Photobiol. 2006, 82, 119-122.
243. a- and β-Stilbenosides as base-pair surrogates in DNA hairpins, L. Zhang, H. Long, G. E. Boldt, K. D. Janda, G. C. Schatz, and F. D. Lewis, Org. Biomol. Chem. 2006, 4, 312-322.
244. Crossover from superexchange to hopping as the mechanism for photoinduced charge transfer in DNA hairpin conjugates, F. D. Lewis, H. Zhu, P. Daublain, T. Fiebig, M. Raychev, Q. Wang, and V. Shafirovich, J. Am. Chem. Soc. 2006, 128, 791-800.
245. Dyamics and mechanism of bridge-dependent charge separation in pyrenyl-urea-nitrobenzene p-stacked protophanes, F. D. Lewis, P. Daublain, G. Delos Santos, W. Liu, A. M. Asatryan, S. A. Markarian, T. Fiebig, M. Raytchev, Q. Wang, J. Am. Chem. Soc. 2006, 128, 4792-48-1.
246. X-ray diffraction ÒfingerprintingÓ of DNA structure in solution for quantitative evaluation of molecular dynamics simulation, X. Zuo, C. Cui, K. M. Merz Jr., L. Zhang, F. D. Lewis, and D. M. Tiede, Proc. Nat. Acad. Sci. USA, 2006, 103, 3534-3539.
247. Solvent
dependent photocyclization and photophysics of some 2-ethynylbiphenyls,
248. A cooperative beads-on-a-string approach to exceptionally stable DNA triplexes, Y. Zheng, H. Long, G. C. Schatz, and F. D. Lewis, Chem. Commun. 2006, 3830-3832.
249. Hole mobility in DNA A tracts, F. D. Lewis, H. Zhu, P. Daublain, B. Cohen, and M. R. Wasielewski, Angew. Chem. Int. Ed. 2006, 45, 7982-7985. 250. Stabilization of DNA hairpins by stilbene capping of the terminal base pair, L. Zhang, H. Zhu, M. C. Sajimon, Jan A. Rojas Stütz, K. Siegmund, C. Richert, V. Shafirovich, and F. D. Lewis, J. Chin. Chem. Soc. 2006, 53, 1501-1507. 2007251. A perylenedicarboxamide linker for DNA hairpins, F. D. Lewis, L. Zhang, R. F. Kelley, D. McCamant, and M. Wasielewski, Tetrahedron, 2007, 63, 3457-3464.
252. Synthesis and properties of nicked dumbbell and dumbbell DNA conjugates having stilbenedicarboxamide linkers, L. Zhang, H. Long, G. C. Schatz and F. D. Lewis, Org. Biomol. Chem.2007, 5, 450-456. 253. Circular dichroism spectra of DNA hairpins studied by the Green function method Balamurugan, D.; Lewis, F. D. & Burin, A. L. Journal Of Physical Chemistry B, 2007, 111, 3982-3989 254. Dynamics and efficiency of DNA hole transport via alternating AT versus poly(A) sequences Lewis, F. D.; Daublain, P.; Cohen, B.; Vura-Weis, J.; Shafirovich, V. & Wasielewski, M. R. Journal of the american chemical society, 2007, 129, 15130+ 255. A perylenedicarboxamide linker for DNA hairpins Lewis, F. D.; Zhang, L.; Kelley, R. F.; McCamant, D. & Wasielewski, M. R. Tetrahedron, 2007, 63, 3457-3464 256. Photochromic dibenzobarrlenes: Long-lived triplet biradical intermediates Sajimon, M. C.; Ramaiah, D.; Suresh, C. H.; Adam, W.; Lewis, F. D. & George, M. V. Journal Of The American Chemical Society, 2007, 129, 9439-9445 257. Structure and electronic spectra of DNA mini-hairpins with G(n): C-n stems Tuma, J.; Tonzani, S.; Schatz, G. C.; Karaba, A. H. & Lewis, F. D. Journal Of Physical Chemistry B, 2007, 111, 13101-13106 258. Molecular wire behavior in pi-stacked donor-bridge-acceptor tertiary arylureas Zeidan, T. A.; Wang, Q.; Fiebig, T. & Lewis, F. D. Journal Of The American Chemical Society, 2007, 129, 9848+ 259. Synthesis and properties of nicked dumbbell and dumbbell DNA conjugates having stilbenedicarboxamide linkers Zhang, L.; Long, H.; Schatz, G. C. & Lewis, F. D. Organic & Biomolecular Chemistry, 2007, 5, 450-456 260. Pyrene excimer fluorescence as a probe for parallel G-quadruplex formation Zhu, H. & Lewis, F. D. Bioconjugate Chemistry, 2007, 18, 1213-1217 2008261. Photoinduced charge separation in pyrenedicarboxamide-linked DNA hairpins Daublain, P.; Siegmund, K.; Hariharan, M.; Vura-Weis, J.; Wasielewski, M. R.; Lewis, F. D.; Shafiovich, V.; Wang, Q.; Raytchev, M. & Fiebig, T. Photochemical & Photobiological Sciences, 2008, 7, 1501-1508 262. Context-dependent photodimerization in isolated thymine-thymine steps in DNA Hariharan, M. & Lewis, F. D. Journal Of The American Chemical Society, 2008, 130, 11870-11871 263. DNA-Templated formation and luminescence of diphenylacetylene dimeric and trimeric complexes Letsinger, R. L.; Wu, T.; Yang, J. & Lewis, F. D. Photochemical & Photobiological Sciences, 2008, 7, 854-859 264. The influence of guanine on DNA hole transport efficiency Lewis, F. D.; Daublain, P.; Cohen, B.; Vura-Weis, J. & Wasielewski, M. R. Angewandte Chemie-International Edition, 2008, 47, 3798-3800 265. Reversible bridge-mediated excited-state symmetry breaking in stilbene-linked DNA dumbbells Lewis, F. D.; Daublain, P.; Zhang, L.; Cohen, B.; Vura-Weis, J.; Wasielewski, M. R.; Shafirovich, V.; Wang, Q.; Raytchev, M. & Fiebig, T. Journal Of Physical Chemistry B, 2008, 112, 3838-3843 266. Getting to guanine: mechanism and dynamics of charge separation and charge recombination in DNA revisited Lewis, F. D.; Zhu, H.; Daublain, P.; Sigmund, K.; Fiebig, T.; Raytchev, M.; Wang, Q. & Shafirovich, V. Photochemical & Photobiological Sciences, 2008, 7, 534-539 267. Effect of loop distortion on the stability and structural dynamics of DNA hairpin and dumbbell conjugates McCullagh, M.; Zhang, L.; Karaba, A. H.; Zhu, H.; Schatz, G. C. & Lewis, F. D. Journal Of Physical Chemistry B, 2008, 112, 11415-11421 268. Charge-transfer and spin dynamics in DNA hairpin conjugates with perylenediimide as a base-pair surrogate Zeidan, T. A.; Carmieli, R.; Kelley, R. F.; Wilson, T. M.; Lewis, F. D. & Wasielewski, M. R. Journal Of The American Chemical Society, 2008, 130, 13945-13955 2009269. Sum rules and determination of exciton coupling using absorption and circular dichroism spectra of biological polymers Burin, A. L.; Armbruster, M. E.; Hariharan, M. & Lewis, F. D. Proceedings Of The National Academy Of Sciences Of The United States Of America, 2009, 106, 989-994 270. Charge recombination in DNA hairpins controlled by counterions Blaustein, G. S.; Dernas, B.; Lewis, F. D.; Burin, A. L. J. Am. Chem. Soc. 2009, 131, 400-401 271. Hydrophobic dimerization and thermal dissociation of perylenediimide-linked DNA hairpins. Hariharan, M.; Zheng, Y.; Long, H.; Zeidan, T. A.; Schatz, G. C.; Vura-Weis, J.; Wasielewski, M. R.; Zuo, X. B.; Tiede, D. M.; Lewis, F. D. Hydrophobic J. Am. Chem. Soc. 2009, 131, 5920-5929 272. Excited state charge transfer and spin dynamics in DNA hairpin conjugates with perylenediimide hairpin linkers. Carmieli, R.; Zeidan, T. A.; Kelley, R. F.; Mi, Q.; Lewis, F. D.; Wasielewski, M. R. J. Phys. Chem. A 2009, 113, 4691-4700 273. Efficient charge transport in DNA diblock oligomers. Vura-Weis, J.; Wasielewski, M. R.; Thazhathveetil, A. K.; Lewis, F. D. J. Am. Chem. Soc. 2009, 131, 9722-9727 274. Structure and photoinduced electron transfer in DNA hairpin conjugates possessing a tethered 5'-pyrenecarboxamide. Siegmund, K.; Daublain, P.; Wang, Q.; Trifonov, A.; Fiebig, T.; Lewis, F. D. J. Phys. Chem. B 2009, 113, 16276-16284 275. Dynamics of photochemical electron injection and efficiency of electron transport in DNA. Daublain, P.; Thazhathveetil, A. K.; Wang, Q.; Trifonov, A.; Fiebig, T.; Lewis, F. D. J. Am. Chem. Soc. 2009, 131, 16790-16797 2010276. Dynamics of ultrafast singlet and triplet charge transfer in anthraquinone-DNA conjugates. Lewis, F. D.; Thazhathveetil, A. K.; Zeidan, T. A.; Vura-Weis, J.; Wasielewski, M. R. J. Am. Chem. Soc. 2010, 132, 444-445. 277. Dynamics and Efficiency of Electron Injection and Transport in DNA Using Pyrenecarboxamide as an Electron Donor and 5-Bromouracil as an Electron Acceptor. Daublain, P.; Thazhathveetil, A. K.; Shafirovich, V.; Wang, Q. A.; Trifonov, A.; Fiebig, F.; Lewis, F. D. J. Phys. Chem. B 2010, 114, 14265-14272. 278. Electron hopping among cofacially stacked perylenediimides assembled by using DNA hairpins. Wilson, T. M.; Zeidan, T. A.; Hariharan, M.; Lewis, F. D.; Wasielewski, M. R. Angew. Chem. Int. Ed. 2010, 49, 2385-2388. 279. Conformational control of TT dimerization in DNA conjugates. A molecular dynamics study. McCullagh, M.; Hariharan, M.; Lewis, F. D.; Markovitsi, D.; Douki, T.; Schatz, G. C. J. Phys. Chem B 2010, 114, 5215-5221. 280. Kinetics of charge separation in poly(A)-poly(T) DNA hairpins. Blaustein, G. S.; Lewis, F. D.; Burin, A. L. J. Phys. Chem. B . 2010, 114, 6732-6739. 281. DNA base-pair flipping with fluorescent perylenediimide pincers. Zeidan, T. A.; Hariharan, M.; Siegmund, K.; Lewis, F. D. Photochem. Photobiol. Sci. 2010, 9, 875-882. 282. Perylenediimide-linked DNA dumbbells: Long-distance electronic interactions and hydrophobic assistance of base-pair melting. Hariharan, M.; Siegmund, K.; Zheng, Y.; Long, H.; Schatz, G. C.; Lewis, F. D. J. Phys. Chem. C 2010, 114, 20466-20471. 283. Structure and stability of alkane-linked DNA hairpin conjugates. Hariharan, M.; Siegmund, K.; Lewis, F. D. J. Org. Chem. 2010, 75, 6236-6243. 284. Conformational control of thymine photodimerization in single-strand and duplex DNA containing locked nucleic acid TT steps. Hariharan, M.; McCullagh, M.; Schatz, G. C.; Lewis, F. D. J. Am. Chem. Soc. 2010, 132, 12856-12858. 285. Direct measurement of the dynamics of hole hopping in extended DNA G-tracts. An unbiased random walk. Mickley Conron, S. M.; Thazhathveetil, A. K.; Wasielewski, M. R.; Burin, A. L.; Lewis, F. D. J. Am. Chem. Soc. 2010, 132, 14388-14390. 286. Hydrophobic self-assembly of a perylenediimide-linked DNA dumbbell into supramolecular polymers. Neelakandan, P.; Pan, Z.; Hariharan, M.; Zheng, Y.; Rybtchiski, B.; Weissman, H.; Lewis, F. D. J. Am. Chem. Soc. 2010, 115, 15808-15813. 2011287. Conformation of a Dodecane DNA Hairpin Linker. Multiple Gauche Bonds Cover the Bases. Siegmund, K.; Hariharan, M.; Lewis, F.D. J. Phys. Chem. B 2011, 132, dx.doi.org/10.1021/jp201188f
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